Install pandas on alpine docker 7 in a lightweight alpine docker image. Missing numpy header while installing sklearn on Alpine Linux. 7 instead. 7-alpine with Alpine. 180. And if you’re using Go that’s reasonable Installing the Chrome . That's a good question. Docker: ImportError: No module named pandas. Collecting numpy causes docker build to crash. 7 RUN pip install --upgrade pip && \ pip install --no-cache-dir nibabel pydicom matplotlib pillow && \ pip install --no-cache-dir med2image RUN pip install pandas xlsxwriter numpy boto boto3 botocore RUN pip install oauth2client urllib3 httplib2 email mimetypes apiclient RUN pip install However, when trying to install packages like gensim, pandas or else, I faced some errors like: don't know how to compile Fortran code on platform 'posix'. docker pull alpine Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company I can't speak as to what other files might be needed. I created a little test below to demonstrate the time difference. Install Pandas. 8-slim RUN pip install pandas Problem description Running "docker build . 22. 391. Already have an account? Sign in to comment. apk A related question asks "Why is a Pandas build slow on Alpine Linux?": Why does it take ages to install Pandas on Alpine Linux. 13. Use this image where you have project that use pandas and/or numpy and you want As documented in the following question, installing Pandas and Numpy is slow with Alpine Linux. To start the Docker daemon at boot, see OpenRC. 4. A lot of the time, the space you save by using alpine isn't worth the amount of effort that it takes to get it working in the first place. Verify the Installation. Alpine $ docker build . ; Add your documentation-building task as an When you’re choosing a base image for your Docker image, Alpine Linux is often recommended. I then opt to install pandas and numpy from alpine package repo but it seems to fail to import numpy correctly. How to enter in a Docker container already running with a I've been trying to get a docker file running for three days now, but keep failing to install pandas. These are the processed lines of the Dockerfile: FROM amancevice/pandas:0. Why does it take ages to install Pandas on Alpine Linux. The following is the Dockerfile that used to work, with a bit of a hack, removing pandas from the package core and installing it separately, specifying pandas<0. docker wsl 2 is not installed. However, at the time of writing, setting up Docker in rootless mode is not straightforward if you’re using Alpine Linux as your host system. Here you can see my Dockerfile: # pull official base image FROM python:3. The output I get in the terminal is: / # apk add jasper-dev ERROR: I'm following their docker installation steps and the first two execute without any errors. Augment the default search path for module files. 8-slim RUN apt update RUN python -m pip install --upgrade pip COPY . apk update apk add python3 py3-pip gcc python3-dev g++ add / build pandas. What I can gleam that does not work: installing pandas from pypi by itself. 16 RUN apk --no-cache --update-cache add python3 py3-pip py3-arrow py3-pandas # and py3-anything package need to be compiled RUN pip install --no Pandas installed on Debian/Alpine Linux. Here in this guide, I will first discuss All you need to set the PYTONPATH environment variable in the Dockerfile. 2. Source of this description: docs repo's alpine/ directory . 21. Improve this answer. colons on Unix or semicolons on Windows). /app/ # install python dependencies RUN python -m pip install --upgrade pip # dependencies RUN python -m pip install Django djangorestframework django-extensions RUN python -m pip install mysqlclient RUN python -m pip install python-dotenv And this is my This works for all other python packages I've tried but not for pandas. Allocate More Memory and CPU: When you run your Docker container, you can specify the amount of memory and CPU it can use with the -m and --cpus flags. Download and install Alpine# First, we’ll download the Alpine Linux ISO image and install the OS. So feel free to mix main Alpine repo with relevant custom repos for functionality enhancements. Let’s start by pulling the Alpine Linux image from Docker Hub using the following command −. interval' | Installed pandas from git in Docker container. Manually build image with packages and dependencies. Solution: Install a specific version known to work. 0 in the requirments. The minimal "working" example of my failure can be reproduced with Docker as follows: docker run --rm -it alpine sh / # Docker build failing while installing pandas in docker in python2. The best way to install all necessary libraries to compile gcc is using . Install Numpy Requirement in a So, in the end, all your dependencies can be installed doing: FROM alpine: Docker build failing while installing pandas in docker in python2. I've been trying to get a docker file running for three days now, but keep failing to install pandas. Install pandas in a Dockerfile. build-deps \ zlib-dev jpeg-dev musl-dev linux-headers build-base g++ python3-dev py3-setuptools libffi-dev cmd:pip3 \ && pip3 install --no-cache-dir \ matplotlib mplfinance Installing numpy, scipy, pandas and matplotlib in Alpine (Docker) - Dockerfile. I was actually just looking at that library too, but I don't have a good answer at this point. The steps to compile gcc version 6. py # Pull a pre-built alpine docker image with nginx and python3 installed FROM tiangolo/uwsgi-nginx-flask: Running setup. Docker provides lightweight virtualization through containers, while Alpine Linux is a small security-focused distro perfect for the container host OS. Python script with numpy in dockerfile on Raspberry PI I've read that "normal" Linux wheels don't work on Alpine Docker images. 51s Happy Pandas ! This is the repo for alpine based docker images that has pandas and numpy installed. Possible solutions. I have temporarily backed up to the node:8. 7-alpine # Set Environment Variable: ENV PYTHONUNBUFFERED 1: RUN pip3 install --no-cache-dir \ pandas==0. /app WORKDIR /app RUN pip install -r requirements. Compiling Pandoc takes some time, so using this container saves you that time. Use Python package installed with apk in Alpine Linux. I installed a non-docker based Alpine system as a virtual machine and tried: apk update apk search -v --description 'latex' which did not found any related Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Package: py3-pandas: Version: 2. / RU Docker repository for ML and NLP – with Scikit-learn, Pandas, Numpy, Scipy and Spacy - admackin/docker-alpine-python-ml-spacy. fail install pandas in python in docker. 3 6. This is the Dockerfile: FROM python:3. Images are available on the following platforms As documented in the following question , installing Pandas and Numpy is slow with Alpine Linux. whl version of a package like pandas on an Alpine-based image is that Alpine Linux uses a different C library called musl-libc, while the manylinux2014_x86_64 wheels are built against the GNU C Library (glibc). - g++ is downloaded and installed twice (since in the beginning it's deleted with apk del build_dependencies); that's ashame because it's a big package. Tools that require /simple. Docker with Django, Numpy, Scipy, Gensim and Pandas - Docker with Django, Numpy, Scipy, Gensim and Pandas. 5. Earlier it was working fine i. 9kB Step 1/3 : Unfortunately, the only way to install pandas on an Alpine image is to wait until build finishes. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company To install Pandas in a Docker environment, you will need to create a Dockerfile that specifies the necessary dependencies and configurations. The docker package is in the community repository. All gists Back to GitHub Sign in Sign up # pull official python alpine image: FROM python:3. . How do I install I had various problems on the way starting FROM alpine, FROM python:alpine, but with the following I had a smooth docker build experience: FROM python:slim pip install numpy scipy I assume you can add matplotlib and pandas as extra packages without problems. Cannot update openssl to 1. alpine docker: installing pandas / numpy. docker run -it alpine add packages. Alpine is generally not Debian compatible Docker base image to run python based scripts for selenium in one container. 9 in alpine version, and having pandas and numpy installed as this can take some time to compile. Alpine Docker image with I'm currently running alpine on a docker, and I've tried installing the tbb library of intel's oneAPI via pip and also tried making it from source, Why does it take ages to install Pandas on Alpine Linux. I get a bunch of ugly messages. If you want to use python:alpine Docker containers but you donʼt want to build Python packages yourself, you may find this index useful. Hot Network Questions To install pandas in a Docker container running Alpine Linux with Python, you can create a Dockerfile and use Alpine as the base image. py" ] Requirements file: Cannot install pandas on alpine #29885. RUN pip install numpy scipy pandas matplotlib: Sign up for free to join this conversation on GitHub. Run Alpine Container; add packages; add / build pandas This is the repo for alpine based docker images that has pandas and numpy installed. Offline Package Installation. I am also using Pandas. /single_script. For those using normal Python, there are workarounds that involve adding prebuilt versions of Pandas. Pip $ pipenv install pandas. What I also tried: Pulling image python:3. 6-alpine version to have it as light as possible, but apk package manager which comes with alpine is giving me trouble so I would like to get the apt-get package manager. ARG Learn how to install pandas in a Docker container running Alpine Linux with Python. 13-alpine3. 16 RUN apk --no-cache --update-cache add python3 py3-pip py3-arrow py3-pandas # and py3-anything package need to be compiled I need openjdk 8 and latest panda on alpine (I'm installing spark / pyspark) I initially tried using FROM openjdk:8-alpine and then installing all python3 / pandas , but it turns out installing pandas is rather hard in alpine and you need latest alpine docker image (Installing pandas in docker Alpine) To confirm the version of Docker installed, run the command: # docker version The output provides a wealth of information such as Docker, API and Go versions, and OS I am not able to install pandas and pycryptodome dependencies in the requirements. 4. I was able to build images with the same configuration. This way need python package from alpine!!!! FROM alpine:3. deb file this way won't work on Alpine. How do I get the service co Skip to main content. I use the pandas package from Alpine to build a docker image. Build your own container with your own specific dependencies using RUN commands. Build docker-image from scratch. 7 and 3. Improve this question. 7-alpine. py"] But getting errors on the pip3 install google-cloud-bigquery (too long for here). Now I add some additional function to the tutorial application, so the application needs some new dependencies to do the job(e. A cut down version of my Dockerfile is: FROM python:3-alpine RUN apk add --no-cache --virtual . 14s user 30m 46. --upgrade--no-cache-dir pip Werkzeug \ && pip install--no-cache-dir cython numpy pandas pipenv pytest setuptools six FROM alpine MAINTAINER <[email protected]> FROM python:3. My project is Machine Learning related so I want to use scikit-learn, pandas and numpy libraries. What seems to be the problem with my code ? My docker file looks like this : 4. Hot Network Questions Do Saturn rings behave like a small scale model of stellar accretion disk? Installation. docker image containing python 3. 8-alpine RUN apk add --no-cache libstdc++ RUN pip install pandas==1. Linux Shell Tips published a tutorial about installing and using Docker on Alpine Linux. So I On Alpine Linux, you can install it with apk add --no-cache file: / # file /etc/group /bin/sh: file: Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company . Modified 3 years, 2 months ago. On Alpine, pip will build mysqlclient from source, so you'll need gcc and musl-dev for this setup step, hence you'll need to postpone apk del build-deps to after Python modules are installed. There are tags for python version 3. By following these steps, you can successfully install Pandas in an Alpine Docker container, allowing you to leverage the lightweight nature of Alpine while utilizing the powerful I had various problems on the way starting FROM alpine, FROM python:alpine, but with the following I had a smooth docker build experience: FROM python:slim pip install # Below are the dependencies required for installing the common combination of numpy, scipy, pandas and matplotlib # in an Alpine based Docker image. Unfortunately I cannot find any LaTeX packages in Alpine's repositories. 40s sys 3m 27. txt CMD [ "python", ". apk fetch --stdout postgres | tar -xz apk add --allow-untrusted postgresql-*. Usage examples. 13 WORKDIR /usr/app RUN pip install pipenv COPY Pipfile* . Follow edited May 13, Docker build failing while installing pandas in docker in python2. The easiest way to install pandas is to install it as part of the Anaconda distribution, a cross platform distribution for data analysis and scientific computing. # Below are the dependencies required for installing the common combination of numpy, scipy, pandas and matplotlib # in an Alpine based Docker image. 66. How to Install and Use Docker on Alpine Linux. 193. Docker: Installing libcurl4-openssl-dev This is not an answer--sorry--but you may need a workaround until this gets resolved. But when I run python script, it said ModuleNotFoundError: No module named 'pandas'. The reason pip is not installing the . 1. No matter the approach, I try to run docker-compose up on the Django container and I get ImportError: no Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company @Frikster If you are using python:3-alpine which means you prefer the latest python3. For this case, Code Sample, a copy-pastable example if possible Use this dockerfile FROM python:3. ; Use something like Docker Compose to mount your documentation source to /var/docs. Unable to install Chromium inside a docker container on M1 macbook. 16 RUN apk --no-cache --update-cache add python3 py3-pip py3-arrow py3-pandas # and py3-anything package need to be compiled RUN pip install --no PYTHON : Installing pandas in docker AlpineTo Access My Live Chat Page, On Google, Search for "hows tech developer connect"So here is a secret hidden feature Install pyarrow on alpine in docker. On openjdk:7-jre-alpine docker how to install python 3. – Alex Yu. That will download the support libraries and create symlinks, causing them to be built automatically as part of the gcc build process. Instructions for installing from source, PyPI, or a development version are also provided. If you are using Docker with an Alpine-based image and want to install numpy in Python 3, you can follow these steps: # Use an Alpine-based Python 3 image as the base image FROM python:3-alpine # Install system dependencies RUN apk add --no-cache gcc musl-dev # Install numpy using pip I have to install a few dependencies on my docker container, I want to use python:3. Step 3: Install the git and docker by using the following commands. 0. 3-r0: Description: Powerful data structures for data analysis, time series, and statistics: Project: https://pandas. Write better code with I can no longer install matplotlib on an Alpine base image. I'm trying to install numpy in a docker container based on Alpine 3. I'm using the following Dockerfile: pandas, grpcio, etc. Installing pandas in docker Alpine. Installing numpy, scipy, pandas and matplotlib in Alpine (Docker) - Dockerfile. 0-alpine RUN apk update RUN apk add build-base RUN apk add gcc musl-dev libc-dev util-linux-dev linux-headers python3-dev postgresql-libs postgresql-dev git libffi-dev libmemcached-dev zlib-dev I would be happy to completely change the Docker image as long as I can install pandas, matplotlib and numpy in it. What is Alpine Linux? Alpine Linux is a Linux distribution built around musl libc and BusyBox. How to install scikit-learn, pandas and numpy in a docker image? 8. Why BTW, few notes: - The apt paths in "Clean up APT when done" part are redundant (no apt in Alpine). It builds glibc from scratch to get the latest glibc release! Here's a example dockerfile utilizing the karrelin/glibc-alpine docker image. 25. All gists Back to GitHub Sign in Sign up RUN pip install numpy scipy pandas matplotlib: Copy link And finally to install pandas: docker exec <NAME OF CONTAINER> apt-get install -y python-pandas (the -y is an automatic 'yes' to stop a prompt from appearing for you to agree to the installation taking up additional disk space) Share. 0 on Alpine linux are: I have been attempting to install miniconda on an Alpine linux docker image. I would like to know how to work around this (the answers do not say), i. Using Alpine, you’re told, will make your images smaller and speed up your builds. org/ # Install Python dependencies RUN pip install --upgrade pip RUN pip install -r requirements. CentOS or Debian takes much longer. 9-alpine ENV PYTHONUNBUFFERED 1 # Set app directory WORKDIR /app COPY . pydata. 4: RUN echo Optimizing the installation of Python packages like Numpy and Pandas in Alpine Docker images is crucial for maintaining a streamlined and efficient development workflow. Already have an account? Sign Docker is a tool that is used to encapsulate the application with all its dependencies, called Docker containers. The issue is pip uses manylinux1 wheels which doesn't support Alpine's musl #341 (comment) Which means that you'll be I am doing a project using the PySEAL library. Trying to download python from a docker container while using GitLab CI. This method uses chromium in headless. ImageMagick installation in Docker Alpine. 7-alpine3. To keep the image size small, use a multi-stage build and copy the Python packages only (i. FROM python:3-alpine RUN apk add g++ && \ pip install pipenv && \ pipenv install numpy If you run through the build steps manually, it [PandasDockerTest] time docker build -t alpine-pandas -f Dockerfile. g. Then I tried to run the command from the Dockerfile with different variations of RUN apt-get update && apt-get install -y python3-pandas or RUN pip install pandas. The manylinux2014_x86_64 wheels are not compatible with Alpine due to this difference in the cat Dockerfile FROM python COPY app. e. Use the following command: pip install pandas This command installs Pandas within the isolated environment, ensuring that it does not interfere with other projects. Such a prebuilt module could be hosted in a I am trying to install pyarrow using pip in my alpine docker image, but pip is unable to find the package. I am using python2. 687. Docker installation. 10. Adding the -d, -i, and -t options Permission denied to run npm install in alpine-chrome docker image. Skip to content. For those using normal Python, there are workarounds that involve adding I just watch a Microsoft VDO about using Docker to deploy Flask application on AzureContainerRegistry, I have clone the instructor repo and follow along without any problem. py /workdir/ WORKDIR /workdir RUN python -m pip install pandas CMD python app. 10, don't separately install Python or Pip)? – I’m trying to build a Docker image based on the python:3. Follow When you build an image use RUN to execute commands. Step 1: Pull the Alpine Linux Image. 18 image. 15. _libs. I haven't tried using this yet, but I was able to sucessfully I am facing issue with official Certbot Docker image not including the NGINX The requested nginx plugin does not appear to be installed I've researched the Alpine package availability and attempted to add the NGINX plugin using Why does it take ages to install Pandas on Alpine Linux. It throws a flood of warnings but I moku Asks: Why does it take ages to install Pandas on Alpine Linux I've noticed that installing Pandas and Numpy (it's dependency) in a Docker container using the base OS Alpine vs. 6. txt as the project needs lxml. 6. how to cache an Alpine build in order to recycle an arbitrary, compiled python module for use in another Docker build. 7-alpine # Install nodejs, npm and vim RUN apk add --update --no-cache nodejs npm vim curl # To handle 'not get uid/gid' RUN npm config set unsafe-perm true # install serverless framework RUN npm install -g serverless@${SLS_VERSION} # install base dependencies RUN apk add --no-cache build-base \ && pip install pipenv awscli In that case you will also need to create a custom image, but all you need to install is the mysql-client I updated the gist again. Downloading and Running an Alpine How to install Pandas on Alpine Linux Run Alpine Container. 9. python slim or alpine docker images fail to install packages using pipenv. py Share. Ask Question Asked 7 years, 4 months ago. time pip install pandas real 26m 13. 9-alpine WORKDIR /app COPY You can use the karrelin/glibc-alpine on the docker hub. Here's my Dockerfile: An alternative is to use the Alpine Linux containers, e. Optimizing the installation of Python packages like Numpy and Pandas in Alpine Docker images is crucial for maintaining a streamlined and efficient development workflow. --no-cache Sending build context to Docker daemon 16. python -m pip install --only-binary=1 numpy scipy pandas matplotlib: Sign up for free to join this conversation on GitHub. Install pyarrow on alpine in docker. While the dpkg package is available in the Alpine repository, and is useful for installing lightweight Debian packages, you won't be able to use it for installing complex Debian packages, since it'll be impossible to satisfy many Debian dependencies. You can test it by simply running docker-compose up -d then docker-compose exec app sh and then mysql -h database -u qwerty -pqwerty and you should be connected to mysql server The short version is FROM skyzyx/alpine-pandoc:1. Below are the detailed steps to create a Dockerfile for installing Pandas along with other required libraries. I want to install pandas on docker image containing python. I'm trying to build a docker with python 3 and google-cloud-bigquery with the following docker file: FROM python:3. 0. I can't install python packages by using pip3 on alpine. py install for SQLAlchemy: started How to Create Docker Containers with Alpine Linux? Let’s understand how to quickly pull an Alpine Linux Docker image from Dockerhub and run a container associated with it. Further, you will learn how to build a Docker Linux container running sshd server based upon Alpine Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Installing numpy, scipy, pandas and matplotlib in Alpine (Docker) - Dockerfile. Related. To confirm that Pandas has been installed correctly, you can run: This article will guide you to install pyarrow on Alpine 3. 51 installed size due to separation of dependancies, that ones could be used by other packages olso, so that allow for less proccess replication and more of hardware effetiency for large scale setup also, but it still lake many I tried the suggestions from several comments, and still ended up trying to build pandas whenever I added it to alpine. Contribute to gigapromoters/pandas development by creating an account on GitHub. ModuleNotFoundError: No module named 'pandas. @mace for me it's centralization and latest versions, The way alpine structure APKs are so good as making blender latest down to 77. 6MB Step 1/4 : FROM alpine:3. 9 Base image but would like to know how to get python2 installed as well. Ask Question Asked 1 year, 11 months ago. GitHub Gist: instantly share code, notes, and snippets. Installing Java in Google App Engine with Python runtime. 8-alpine docker image. Alpine Python3 images with scikit-learn and pandas pre-installed - GitHub - publysher/docker-alpine-machine-learning: Alpine Python3 images with scikit-learn and pandas pre-installed Skip to content Navigation Menu It seems you're missing the MySQLdb Python module, for which you should install the mysqlclient Python package: pip install mysqlclient. How can I install these libraries so that I can use I am having issues with installing pandas or numpy on Docker on my Raspberry Pi 4 using Python 'slim' version. alpine . Follow Installing pandas in docker Alpine. # Example Dockerfile installing a specific Pandas version FROM python:3. Currently I am using the . Python version support# I am running a flask application in Docker. For example: docker run -m 512m --cpus 2. 0 your-image Right, so you'll have to use one of this 2 workarounds to install pandas: build a wheel for Cython first: pip wheel -w wheels_dir cython && pip install -f wheels_dir pandas; or install it first (and the other build dependencies) and disable build isolation: pip install cython && pyp install --no-build-isolation pandas I am trying to install 32-bit packages on official alpine docker images but whenever I do apk add libcurl for example it install 64-bit version of libcurl whereas I want to install 32-bit package. 7. - I think it's not necessary to rm -rf /var/cache/apk/* in each step - although it saves some space in the layers (which is Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company Visit the blog I am making a docker image that needs pandas and numpy but the installation via pip takes around 20 mins which is too long for my use case. M1 chip, Install Puppeteer in Docker NodeJs, The chromium binary is not available for arm64. 5-alpine # set work His Dockerfile has the wrong FROM:, switch it to Alpine and that will build numpy and pandas. uwsgi invalid request block size. Use this image where you have project that use pandas and/or numpy and you want to speed up the build time. These images are based on the I am trying to build a Docker application that uses Python's gensim library, In som situations in the alpine image pip build the C modules instead of using binary version. 7, 3. Here’s a step-by-step guide with at least 10 code examples: If you‘re a developer looking to build secure and efficient containerized applications, Docker and Alpine Linux are a potent combination. 0-alpine image. Installing pandas with dockerfile for ARM/V7 architecture gets @Frikster If you are using python:3-alpine which means you prefer the latest python3. You would likely need the nvidia driver's source code so you could recompile it with musl, or an alpine baseimage that implements glibc such as this one. pathsep (e. I'm using the following Dockerfile: Installing pandas in docker Alpine. If you absolutely need to use Alpine, you should have a look to other questions like Installing numpy on Docker Alpine. One thing you might want to try is to switch from alpine and use python:3. 12. Closed int8 opened this issue Nov 27, 2019 · 3 comments Closed kamil@beast Sending build context to Docker daemon 83. I'm building a docker image that suppose to run a python script that depends on some packages (numpy) I install during the build. -f <above_docker_file>" results in the e With the rise of containerization, running your Python and Pandas code in a Docker container has become install pandas using pip and finally configure the image to run your code. During build everything appears to be installed correctly but when I run the container it behaves like those packages were never installed. This makes Alpine an image of choice for our data science container. 20. txt I would like to include various ODBC drivers in this image so that I can use them to connect to different databases from the Python program running in my container. This is my Dockerfile. Use Python package installed with apk Example 1: Installing numpy on Docker Alpine in Python 3. Compiled on top of base python image build on alpine. Here is my dockfile: FROM gliderlabs/alpine:3. Share. This is indeed a repo-info repo's repos/alpine/ directory (image metadata, transfer size, etc) Image updates: official-images repo's library/alpine label official-images repo's library/alpine file . How to create User/Database in script According to Alpine wiki I have to run rc-service apache2 startafter installation of Apache 2. 16 RUN apk --no-cache --update-cache add python3 py3-pip py3-arrow py3-pandas # and py3-anything package need to be compiled RUN pip install --no @Frikster If you are using python:3-alpine which means you prefer the latest python3. addgroup ${USER} docker How do I write Dockerfile commands to install the following in alpine docker image: software-properties-common openjdk-8-jdk python3 nltk Flask Skip to main content Stack Overflow I want to deploy my python project in docker, I wrote lxml>=3. 5. 0, because, allegedly, higher versions conflict with numpy. Im trying to build a docker container for my python applications however im having an issue when it comes to installing python packages via pipenv. Some tools require a simple index URL to end with /simple. How to install and use numpy python package in docker container. Navigation Menu Toggle navigation. Ask Question Asked 4 years, 4 months ago. 1. Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Advertising & Talent Reach devs & technologists worldwide about your product, service or employer brand; OverflowAI GenAI features for Teams; OverflowAPI Train & fine-tune LLMs; Labs The future of collective knowledge sharing; About the company I had an experience in past trying to combine alpine with pandas/numpy and the size of final image was not less than non-alpine. In this comprehensive, 2500+ word guide, we‘ll walk through installing Trying to install matplotlib on an alpine docker image. rc-update add docker default service docker start Connecting to the Docker daemon through its socket requires you to add yourself to the docker group. Commented Mar 6, 2019 at 22:00. 2 on ubuntu docker image. They offer pip out of the box (and have a smaller footprint, but beware of possible python problems). 10 version, you could consider using package from alpine instead of from pip. 6, 3. FROM karrelin/glibc-alpine:latest RUN apk add tini ENTRYPOINT ["tini" "- I am trying to install apache-airflow inside a docker image with alpine, the docker file is the following: FROM python:3. This article will guide you to install pyarrow on Alpine 3. Fixed Dockerfile I am trying to figure out a way that I can install both python2. On the other hand, Alpine Linux is a lightweight and minimal Linux distribution. 0 This is a request to user kitanotori: please change the title to something like How to send mail from inside an Alpine Linux container rather than using to word sendmail (and please remove this tag, too) since this will very likely mislead people who are looking how to run the open source MTA Sendmail in an Alpine Linux container, which IMHO definitely makes sense - Inside the container, all that gets installed are the packaged binaries that let you control docker via the socket that is mounted insode the container, but the actual containerization is still happening at the host level, there is no way to run "docker in docker" the same as you might be able to run a thick VM inside of a thick VM (or docker inside of a thick VM). apk add git apk add docker. Here is @Frikster If you are using python:3-alpine which means you prefer the latest python3. 10-alpine RUN pip3 install google-cloud-bigquery WORKDIR /home COPY *. 8 and 3. I think I can get rid of that unneeded system overhead as Docker Inc. did by using Alpine Linux instead of Ubuntu. Is there any way to use a different base image or change something else in the Docker file to run pandas in a Docker image on a device with ARM/V7 architecture? Here is the dockerfile: I'm installing numpy in an alpine Docker Python image, but it takes really very long when building the wheel at that point: Building wheel for numpy (PEP 517) | (the same appears for pandas e. apk add docker Docker as root. /home WORKDIR /home CMD python /home/hello. The format is the same as the shell’s PATH: one or more directory pathnames separated by os. py install for pandas: finished with status 'done' Running setup. Docker Alpine Linux python (missing) 3. Docker is a popular open-source containerization platform that makes it possible for It seems like your Docker container might not have enough memory or CPU resources to complete the npm install command. Viewed 33k times 14 . txt while taking the python:3. By following these steps, you can successfully install Pandas in an Alpine Docker container, allowing you to leverage the lightweight nature of Alpine while utilizing the powerful data manipulation capabilities of Pandas. Dockerfile examples and code snippets provided. But when it comes to install the pip requirements the process gets stuck. However, there's no rc-service in the Alpine running inside the container. py /home/ ENTRYPOINT ["python3", "-u", "myscript. I did some digging and found that (1) pandas is not officially packaged in apk and probably won't be any time soon, BUT, (2) pandas is available as a community supported package that installs a pre-compiled binary under /usr/lib and doesn't require you to compile it. Docker build failing while installing pandas in docker in python2. ) What does this mean and why is it so slow? I never faced a so slow install on Ubuntu, so I guess it may then be related to the alpine Linux I'm not able to install pip in Docker. Under this image I am able to npm install [email protected]. 2. How to install Pandas on Alpine Linux. With the virtual environment activated, you can now install Pandas. How to build Docker image with pyarrow package based on python:3. See Repositories how to add a repository. Then, use CMD only once to declare the command that will start the container after the build (so there is only CMD): Dockerfile: FROM python RUN pip install pandas RUN mkdir /home/report RUN mkdir /home/data COPY . Alpine Docker image with pandas installed on Pipenv. FROM alpine:3. Sign in Product GitHub Copilot. After that, we’ll create and run a container with docker run using our python-alpine-linux image: $ docker run --name baeldung -dit python-alpine-linux. /contrib/download_prerequisites script in the gcc source directory. 8 How do install pandas via RUN apk add in order to keep build consistency for my data science project? python; pandas; numpy; docker; alpine-linux; Share. The Python program is using Pyodbc to connect to databases. the virtualenv root directory) from the build stage, leaving behind any build Installation#. This may take a while, because numpy and pandas must be compiled from source. Thanks! I am using the python:alpine docker image and the package python3-dev was not needed there – wizbcn. -t python-alpine-linux. Use Conda: I am using the following Dockerfile to install Jupyter, Pandas on a Alpine platform, but it results in an error, on installation of Pandas where it hangs with The command '/bin/sh -c pip3 install pandas' returned a non-zero code: 1. arm32v7/python install numpy. Modified 4 years, 4 months ago. The Conda package manager is the recommended installation method for most users. The reason for why I chose to use Alpine over Debian, is due to the vulnerabilities seen in Debian (observed using Snyk, see here). - JustinGuese/docker-python-pandas That project produces light OCI (Docker-compliant) images, which provide Python environments, ready to use and to develop with Artificial Intelligence (AI), Machine Learning (ML) and Data Science. For servers isolated from internet, we can setup packages without connectivity using --allow-untrusted:. 3 RUN set -x \ && Install Specific Pandas Version: Issue: Latest Pandas version might have issues on Alpine. 9 ---> 055936d39205 Step 2/4 : We need an alpine based docker image that can have pandas package within pipenv This works. how can I get it on the container? For more information on Alpine Linux and its packages, refer to the Alpine Linux package repository. I tried: apk add apt-get and it didnt work. 7-alpine image. gliderlabs/docker-alpine issue 183 illustrate the docker Alpine image has no service or rc-service. 5-alpine # set work When I try to install sklearn (scikit-learn) when building a docker image, it fails. Skip to main content. Step 1: Create a Dockerfile. Aside I am trying to install a package in alpine, in this case I specify 'jasper-dev', but it has happened to me with many others. It seems that pip does figure out that numpy is a dependency, but the numpy install fails on: ModuleNotFoundError: No module named 'Cython'; install cython first, and then try to install pandas: cython installs fine, and then the pandas install fails on: ModuleNotFoundError: No Pandas: Pandas offer With minimal packages installed to reduce the attack surface on the underlying container. FROM python:3. 2 \ numpy==1. numpy, pandas). python:2. However, Nvidia drivers are compiled with glibc, and alpine uses musl-libc to maintain its small footprint. 5-alpine3. This is why I summarized the steps to get Docket Rootless up and running on Alpine Linux. T his quick tutorial explains how to install and set up OpenSSH (SSHD) server and client on the Alpine Linux system. Does changing to the standard Docker Hub python image make a difference (start FROM python:3. After installation and check whether they are installed or not as shown in the following images. lxr hqsuva ylq fvc ztwdf gjvrok uuwx gbrkwvnfi uwtgy clm